Welcome to BioOpt’s documentation!

Bioopt is a library for creating, manipulating and converting and exporting BioOpt files

Contents:

• Installation
  • Python installation
  • Installing optional dependencies
  • Solvers
  • Testing your installation
• Getting started
  • Open BioOpt file
  • Retrieve reactions
  • Retrieve metabolites
  • Access reaction information
  • Access metabolite information
• Building model
  • Explicit notation
  • Short-hand notation
  • Write BioOpt file
• Converting BioOpt model
  • Convert to libSBML object
• BioOpt Classes (API)
  • Model
  • Converter

• Index